Transcript: lnc-ALX4-6:1

Basic information

LNCipedia transcript ID: lnc-ALX4-6:1 
LNCipedia gene ID: lnc-ALX4-6
Ensembl Gene ID: ENSG00000255340
Ensembl Transcript ID: ENST00000530042
Location (hg38): chr11:43378882-43385671
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 444 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530042.1; RP11-484D2.5-001; OTTHUMT00000390387.1; NONHSAT018925
Alternative gene names: ENSG00000255340.1; RP11-484D2.5; OTTHUMG00000166551.1; AC087276.4; AC087276.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.014 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALX4-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALX4-6:1
4.0 lnc-ALX4-6:1
4.1 lnc-ALX4-6:1
5.0 lnc-ALX4-6:1
5.1 lnc-RAG2-20:1
5.2 lnc-ALX4-6:1