Transcript: lnc-ALX4-7:1

Basic information

LNCipedia transcript ID: lnc-ALX4-7:1 
LNCipedia gene ID: lnc-ALX4-7
Ensembl Gene ID: ENSG00000254907
Ensembl Transcript ID: ENST00000526220
Location (hg38): chr11:43328748-43359296
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 787 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526220.1; RP11-484D2.2-001; OTTHUMT00000389559.1; NONHSAT018919
Alternative gene names: ENSG00000254907.1; RP11-484D2.2; OTTHUMG00000166396.1; AC087276.3; AC087276.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.0233 non-coding 
CPAT coding probability 9.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALX4-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALX4-7:1
4.0 lnc-ALX4-7:1
4.1 lnc-ALX4-7:1
5.0 lnc-ALX4-7:1
5.1 lnc-RAG2-19:2
5.2 lnc-ALX4-7:1