Transcript: lnc-AMD1-1:1

Basic information

LNCipedia transcript ID: lnc-AMD1-1:1 
LNCipedia gene ID: lnc-AMD1-1
Location (hg38): chr6:110586512-110589015
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011917; NONHSAT114427
Alternative gene names: XLOC_005425; linc-AMD1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.8222 non-coding 
CPAT coding probability 5.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMD1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMD1-1:1
3.1 lnc-AMD1-1:1
4.0 lnc-AMD1-1:1
4.1 lnc-AMD1-1:1
5.0 lnc-AMD1-1:1
5.1 lnc-SLC16A10-15:1
5.2 lnc-AMD1-1:1