Transcript: lnc-AMDHD2-1:1

Basic information

LNCipedia transcript ID: lnc-AMDHD2-1:1 
LNCipedia gene ID: lnc-AMDHD2-1
Ensembl Gene ID: ENSG00000261288
Ensembl Transcript ID: ENST00000569220
Location (hg38): chr16:2554975-2556105
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 572 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569220.1; RP11-20I23.11-001; OTTHUMT00000436104.1; NONHSAT052140
Alternative gene names: ENSG00000261288.1; RP11-20I23.11; OTTHUMG00000177283.1; AC093525.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.6396 non-coding 
CPAT coding probability 5.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMDHD2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMDHD2-1:1
4.0 lnc-AMDHD2-1:1
4.1 lnc-AMDHD2-1:1
5.0 lnc-AMDHD2-1:1
5.1 lnc-DNASE1L2-34:1
5.2 lnc-AMDHD2-1:1