Transcript: lnc-AMELY-1:6

Basic information

LNCipedia transcript ID: lnc-AMELY-1:6 
LNCipedia gene ID: lnc-AMELY-1
Location (hg38): chrY:9519666-9525268
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 467 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014
Alternative transcript names: ENST00000418016.1; FAM197Y2P-001; OTTHUMT00000099480.1; NR_001553; NR_046300
Alternative gene names: ENSG00000234803.2; FAM197Y2P; OTTHUMG00000041523.1; ENSG00000234803.3; FAM197Y2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.2687 non-coding 
CPAT coding probability 19.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMELY-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006156.2-1:2
4.0 lnc-AC006156.1-1:5
4.1 lnc-AC006156.1-1:5
5.0 lnc-AC006156.1-1:5
5.1 lnc-DAZ1-118:3
5.2 lnc-AMELY-1:6