Transcript: lnc-AMELY-4:1

Basic information

LNCipedia transcript ID: lnc-AMELY-4:1 
LNCipedia gene ID: lnc-AMELY-4
Location (hg38): chrY:6314755-6316241
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 410 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017621; ENST00000417585; ENST00000417585.1; AC006335.12-001; OTTHUMT00000098308.1; NONHSAT139335
Alternative gene names: XLOC_008311; linc-SRY-5; ENSG00000234659; AC006335.12; ENSG00000234659.1; OTTHUMG00000040952.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9327 non-coding 
CPAT coding probability 5.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMELY-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMELY-4:1
3.1 lnc-AMELY-4:1
4.0 lnc-AMELY-4:1
4.1 lnc-AMELY-4:1
5.0 lnc-AMELY-4:1
5.1 lnc-DAZ1-143:1
5.2 lnc-AMELY-4:1