Transcript: lnc-AMFR-1:1

Basic information

LNCipedia transcript ID: lnc-AMFR-1:1 
LNCipedia gene ID: lnc-AMFR-1
Ensembl Gene ID: ENSG00000272372
Ensembl Transcript ID: ENST00000606772
Location (hg38): chr16:56351886-56353524
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1639 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568981.1; RP11-441F2.1-001; OTTHUMT00000434536.1; NONHSAT142669; ENST00000606772.1
Alternative gene names: ENSG00000259860.1; RP11-441F2.1; OTTHUMG00000176972.1; ENSG00000272372.1; RP11-441F2.5; AC009102.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.6332 non-coding 
CPAT coding probability 6.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMFR-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMFR-1:1
4.0 lnc-AMFR-1:1
4.1 lnc-AMFR-1:1
5.0 lnc-AMFR-1:1
5.1 lnc-CFAP20-62:1
5.2 lnc-AMFR-1:1