Transcript: lnc-AMMECR1-1:1

Basic information

LNCipedia transcript ID: lnc-AMMECR1-1:1 
LNCipedia gene ID: lnc-AMMECR1-1
Location (hg38): chrX:110456780-110596021
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017362; NONHSAT138171
Alternative gene names: XLOC_008208; linc-AMMECR1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.7644 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMMECR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMMECR1-1:1
3.1 lnc-AMMECR1-1:1
4.0 lnc-AMMECR1-1:1
4.1 lnc-AMMECR1-1:1
5.0 lnc-AMMECR1-1:1
5.1 lnc-RAB40A-76:1
5.2 lnc-AMMECR1-1:1