Transcript: lnc-AMN1-2:2

Basic information

LNCipedia transcript ID: lnc-AMN1-2:2 
LNCipedia gene ID: lnc-AMN1-2
Location (hg38): chr12:31750180-31779353
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1694 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020754; NONHSAT027575
Alternative gene names: XLOC_010043; linc-AMN1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.3619 non-coding 
CPAT coding probability 2.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMN1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-H3F3C-1:1
3.1 lnc-H3F3C-1:1
4.0 lnc-H3F3C-1:1
4.1 lnc-AMN1-2:2
5.0 lnc-AMN1-2:2
5.1 lnc-RPAP3-103:1
5.2 lnc-AMN1-2:2