Transcript: lnc-AMY1B-1:2

Basic information

LNCipedia transcript ID: lnc-AMY1B-1:2 
LNCipedia gene ID: lnc-AMY1B-1
Location (hg38): chr1:103432978-103525517
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 241 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002423
Alternative gene names: XLOC_000945; linc-COL11A1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.3609 non-coding 
CPAT coding probability 4.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMY1B-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL11A1-2:2
3.1 lnc-AMY1B-1:2
4.0 lnc-AMY1B-1:2
4.1 lnc-AMY1B-1:2
5.0 lnc-AMY1B-1:2
5.1 lnc-EXTL2-25:1
5.2 lnc-AMY1B-1:2