Transcript: lnc-AMY1B-1:3

Basic information

LNCipedia transcript ID: lnc-AMY1B-1:3 
LNCipedia gene ID: lnc-AMY1B-1
Location (hg38): chr1:103418769-103525517
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 462 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001615; NONHSAT004892
Alternative gene names: XLOC_000945; linc-COL11A1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.3609 non-coding 
CPAT coding probability 14.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMY1B-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL11A1-2:3
3.1 lnc-AMY1B-1:3
4.0 lnc-AMY1B-1:3
4.1 lnc-AMY1B-1:3
5.0 lnc-AMY1B-1:3
5.1 lnc-EXTL2-25:2
5.2 lnc-AMY1B-1:3