Transcript: lnc-AMY1B-1:4

Basic information

LNCipedia transcript ID: lnc-AMY1B-1:4 
LNCipedia gene ID: lnc-AMY1B-1
Location (hg38): chr1:103418754-103525493
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 504 bp
Exons: 5
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00000595; ENST00000447322.1; RP11-153F1.1-002; OTTHUMT00000099063.1
Alternative gene names: XLOC_000945; linc-COL11A1; ENSG00000224613.1; RP11-153F1.1; OTTHUMG00000041348.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.3609 non-coding 
CPAT coding probability 12.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMY1B-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL11A1-2:4
3.1 lnc-AMY1B-1:4
4.0 lnc-AMY1B-1:4
4.1 lnc-AMY1B-1:4
5.0 lnc-AMY1B-1:4
5.1 lnc-EXTL2-25:7
5.2 lnc-AMY1B-1:4