Transcript: lnc-AMY1C-2:1

Basic information

LNCipedia transcript ID: lnc-AMY1C-2:1 
LNCipedia gene ID: lnc-AMY1C-2
Location (hg38): chr1:104125557-104129861
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001083; NONHSAT004906
Alternative gene names: XLOC_000326; linc-PRMT6-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.881 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMY1C-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMY1C-1:1
3.1 lnc-AMY1C-2:1
4.0 lnc-AMY1C-2:1
4.1 lnc-AMY1C-2:1
5.0 lnc-AMY1C-2:1
5.1 lnc-SLC30A7-68:4
5.2 lnc-AMY1C-2:1