Transcript: lnc-AMY1C-2:5

Basic information

LNCipedia transcript ID: lnc-AMY1C-2:5 
LNCipedia gene ID: lnc-AMY1C-2
Location (hg38): chr1:104073023-104077087
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1225 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000418362.1; RP11-364B6.1-001; OTTHUMT00000030377.1; NONHSAT004904
Alternative gene names: ENSG00000215869.3; RP11-364B6.1; OTTHUMG00000011047.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 50.7393 non-coding 
CPAT coding probability 20.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AMY1C-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMY1C-1:1
4.0 lnc-AMY1C-2:5
4.1 lnc-AMY1C-2:5
5.0 lnc-AMY1C-2:5
5.1 lnc-SLC30A7-68:2
5.2 lnc-AMY1C-2:5