Transcript: lnc-AMZ2-1:3

Basic information

LNCipedia transcript ID: lnc-AMZ2-1:3 
LNCipedia gene ID: lnc-AMZ2-1
Location (hg38): chr17:68186149-68187206
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 973 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025971; NONHSAT055516
Alternative gene names: XLOC_012288; linc-AMZ2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.0331 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMZ2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMZ2-1:3
3.1 lnc-AMZ2-1:3
4.0 lnc-AMZ2-1:3
4.1 lnc-AMZ2-1:3
5.0 lnc-AMZ2-1:3
5.1 lnc-TANC2-102:4
5.2 lnc-AMZ2-1:3