Transcript: lnc-ANGPTL1-3:1

Basic information

LNCipedia transcript ID: lnc-ANGPTL1-3:1 
LNCipedia gene ID: lnc-ANGPTL1-3
Ensembl Gene ID: ENSG00000273062
Ensembl Transcript ID: ENST00000608517
Location (hg38): chr1:178724306-178726285
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1980 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608517.1
Alternative gene names: ENSG00000273062.1; RP11-428K3.1; AL449106.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.1133 non-coding 
CPAT coding probability 98.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANGPTL1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANGPTL1-3:1
4.0 lnc-ANGPTL1-3:1
4.1 lnc-ANGPTL1-3:1
5.0 lnc-ANGPTL1-3:1
5.1 lnc-SH2D1B-167:1
5.2 lnc-ANGPTL1-3:1