Transcript: lnc-ANKK1-1:1

Basic information

LNCipedia transcript ID: lnc-ANKK1-1:1 
LNCipedia gene ID: lnc-ANKK1-1
Ensembl Gene ID: ENSG00000256757
Ensembl Transcript ID: ENST00000546284
Location (hg38): chr11:113405321-113412117
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 524 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546284.1; RP11-159N11.3-001; OTTHUMT00000395832.1; NONHSAT024246
Alternative gene names: ENSG00000256757.1; RP11-159N11.3; OTTHUMG00000167716.1; AP002840.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.6303 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKK1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKK1-1:1
4.0 lnc-ANKK1-1:1
4.1 lnc-ANKK1-1:1
5.0 lnc-ANKK1-1:1
5.1 lnc-PTS-28:1
5.2 lnc-ANKK1-1:1