Transcript: lnc-ANKMY1-2:4

Basic information

LNCipedia transcript ID: lnc-ANKMY1-2:4 
LNCipedia gene ID: lnc-ANKMY1-2
Ensembl Gene ID: ENSG00000218416
Ensembl Transcript ID: ENST00000404891
RefSeq ID: NR_024014
Location (hg38): chr2:240449419-240456700
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2017 bp
Exons: 2
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024014; ENST00000404891.1; NR_024014.1
Alternative gene names: ENSG00000218416.4; PP14571; AC110619.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.6538 non-coding 
CPAT coding probability 91.53% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANKMY1-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC110619.2.1-2:1
4.0 lnc-AC110619.2.1-2:1
4.1 lnc-AC110619.2.1-2:1
5.0 lnc-AC110619.2.1-2:1
5.1 lnc-STK25-33:2
5.2 lnc-ANKMY1-2:4