Transcript: lnc-ANKRD18B-2:1

Basic information

LNCipedia transcript ID: lnc-ANKRD18B-2:1 
LNCipedia gene ID: lnc-ANKRD18B-2
Location (hg38): chr9:33500948-33502753
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 421 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015659; ENST00000421855; ENST00000421855.1; RP11-255A11.13-001; OTTHUMT00000001044.1; NONHSAT130732
Alternative gene names: XLOC_007322; linc-PRSS3-5; ENSG00000228678; RP11-255A11.13; ENSG00000228678.1; OTTHUMG00000000407.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.3445 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD18B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD18B-2:1
3.1 lnc-ANKRD18B-2:1
4.0 lnc-ANKRD18B-2:1
4.1 lnc-ANKRD18B-2:1
5.0 lnc-ANKRD18B-2:1
5.1 lnc-RECK-62:2
5.2 lnc-ANKRD18B-2:1