Transcript: lnc-ANKRD18B-6:10

Basic information

LNCipedia transcript ID: lnc-ANKRD18B-6:10 
LNCipedia gene ID: lnc-ANKRD18B-6
Location (hg38): chr9:33604297-33605281
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000432139; ENST00000432139.1; RP11-255A11.21-001; OTTHUMT00000001041.1; NONHSAT130770
Alternative gene names: ENSG00000226562; RP11-255A11.21; ENSG00000226562.1; OTTHUMG00000000405.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5527 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD18B-6:10 no no no no

Available literature

  1. Abdelmohsen (2013), Senescence-associated lncRNAs: senescence-associated long noncoding RNAs., Aging Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL139008.2-1:2
3.1 lnc-AL139008.2-1:2
4.0 lnc-ANKRD18B-6:10
4.1 lnc-ANKRD18B-6:10
5.0 lnc-ANKRD18B-6:10
5.1 lnc-RECK-59:10
5.2 lnc-ANKRD18B-6:10