Transcript: lnc-ANKRD18B-6:7

Basic information

LNCipedia transcript ID: lnc-ANKRD18B-6:7 
LNCipedia gene ID: lnc-ANKRD18B-6
Location (hg38): chr9:33602501-33605293
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 902 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433357; ENST00000433357.1; RP11-255A11.21-002; OTTHUMT00000001042.1; NONHSAT130769
Alternative gene names: ENSG00000226562; RP11-255A11.21; ENSG00000226562.1; OTTHUMG00000000405.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.8932 non-coding 
CPAT coding probability 8.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD18B-6:7 no no no no

Available literature

  1. Abdelmohsen (2013), Senescence-associated lncRNAs: senescence-associated long noncoding RNAs., Aging Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL139008.2-1:1
3.1 lnc-AL139008.2-1:1
4.0 lnc-ANKRD18B-6:7
4.1 lnc-ANKRD18B-6:7
5.0 lnc-ANKRD18B-6:7
5.1 lnc-RECK-59:7
5.2 lnc-ANKRD18B-6:7