Transcript: lnc-ANKRD30A-15:2

Basic information

LNCipedia transcript ID: lnc-ANKRD30A-15:2 
LNCipedia gene ID: lnc-ANKRD30A-15
Ensembl Gene ID: ENSG00000237002
Ensembl Transcript ID: ENST00000418875
Location (hg38): chr10:36438616-36442392
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 321 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418875; ENST00000418875.1; RP11-92J19.3-001; OTTHUMT00000047582.1; NONHSAT012750
Alternative gene names: ENSG00000237002; RP11-92J19.3; ENSG00000237002.1; OTTHUMG00000017963.1; ENSG00000237002.2; SNORA40; ENSG00000237002.6; AL590730.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -231.7926 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD30A-15:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD30A-6:2
3.1 lnc-ANKRD30A-7:2
4.0 lnc-ANKRD30A-7:2
4.1 lnc-ANKRD30A-7:2
5.0 lnc-ANKRD30A-7:2
5.1 lnc-NPY4R2-143:2
5.2 lnc-ANKRD30A-15:2