Transcript: lnc-ANKRD30B-13:1

Basic information

LNCipedia transcript ID: lnc-ANKRD30B-13:1 
LNCipedia gene ID: lnc-ANKRD30B-13
Ensembl Gene ID: ENSG00000283294
Ensembl Transcript ID: ENST00000577614
Location (hg38): chr18:14225224-14342505
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3505 bp
Exons: 13
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577614.2
Alternative gene names: ENSG00000283294.1; RP11-681B3.4; AP005212.5; AP005212.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 85.39 coding 
CPAT coding probability 87.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANKRD30B-13:1 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MC5R-12:8
5.0 lnc-MC5R-12:8
5.1 lnc-RIOK3-102:1
5.2 lnc-ANKRD30B-13:1