Transcript: lnc-ANKRD30B-13:12

Basic information

LNCipedia transcript ID: lnc-ANKRD30B-13:12 
LNCipedia gene ID: lnc-ANKRD30B-13
Location (hg38): chr18:14340385-14342512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 669 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1657:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.2145 non-coding 
CPAT coding probability 21.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD30B-13:12 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ANKRD30B-7:6
4.1 lnc-MC5R-12:12
5.0 lnc-MC5R-12:12
5.1 lnc-RIOK3-102:12
5.2 lnc-ANKRD30B-13:12