Transcript: lnc-ANKRD30B-13:13

Basic information

LNCipedia transcript ID: lnc-ANKRD30B-13:13 
LNCipedia gene ID: lnc-ANKRD30B-13
Location (hg38): chr18:14340404-14342525
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000578285.1; CYP4F35P-002; OTTHUMT00000442866.1; NONHSAT058517
Alternative gene names: ENSG00000265787.1; CYP4F35P; OTTHUMG00000178670.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.2145 non-coding 
CPAT coding probability 30.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD30B-13:13 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD30B-7:2
4.0 lnc-ANKRD30B-7:2
4.1 lnc-MC5R-12:13
5.0 lnc-MC5R-12:13
5.1 lnc-RIOK3-102:13
5.2 lnc-ANKRD30B-13:13