Transcript: lnc-ANKRD30B-13:9

Basic information

LNCipedia transcript ID: lnc-ANKRD30B-13:9 
LNCipedia gene ID: lnc-ANKRD30B-13
Location (hg38): chr18:14336076-14342512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4211 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1657:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 50.5258 non-coding 
CPAT coding probability 6.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANKRD30B-13:9 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ANKRD30B-7:5
4.1 lnc-MC5R-12:9
5.0 lnc-MC5R-12:9
5.1 lnc-RIOK3-102:9
5.2 lnc-ANKRD30B-13:9