Transcript: lnc-ANKRD36B-3:28

Basic information

LNCipedia transcript ID: lnc-ANKRD36B-3:28 
LNCipedia gene ID: lnc-ANKRD36B-3
Ensembl Gene ID: ENSG00000230606
Ensembl Transcript ID: ENST00000621982
Location (hg38): chr2:97416165-97423529
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 724 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411738; ENST00000411738.1; AC159540.1-004; OTTHUMT00000328922.1; ENST00000621982.4
Alternative gene names: ENSG00000230606; AC159540.1; ENSG00000230606.3; OTTHUMG00000152989.1; ENSG00000230606.6; ENSG00000230606.10; AC092683.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.9617 non-coding 
CPAT coding probability 4.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD36B-3:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACTR1B-3:3
3.1 lnc-ACTR1B-3:3
4.0 lnc-ACTR1B-3:3
4.1 lnc-ACTR1B-3:3
5.0 lnc-ACTR1B-3:3
5.1 lnc-AFF3-48:28
5.2 lnc-ANKRD36B-3:28