Transcript: lnc-ANKRD42-2:2

Basic information

LNCipedia transcript ID: lnc-ANKRD42-2:2 
LNCipedia gene ID: lnc-ANKRD42-2
Ensembl Gene ID: ENSG00000255234
Ensembl Transcript ID: ENST00000534572
Location (hg38): chr11:83286359-83305124
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 453 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534572.1; RP11-727A23.10-002; OTTHUMT00000393077.1; NONHSAT023409
Alternative gene names: ENSG00000255234.1; RP11-727A23.10; OTTHUMG00000167091.1; ENSG00000255234.5; AP000446.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7423 non-coding 
CPAT coding probability 10.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD42-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD42-2:2
4.0 lnc-ANKRD42-2:2
4.1 lnc-ANKRD42-2:2
5.0 lnc-ANKRD42-2:2
5.1 lnc-DDIAS-11:7
5.2 lnc-ANKRD42-2:2