Transcript: lnc-ANKRD62-2:1

Basic information

LNCipedia transcript ID: lnc-ANKRD62-2:1 
LNCipedia gene ID: lnc-ANKRD62-2
Ensembl Gene ID: ENSG00000267722
Ensembl Transcript ID: ENST00000591853
Location (hg38): chr18:12081540-12085267
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 258 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT058340; ENST00000591853.1
Alternative gene names: ENSG00000267722.1; RP11-815J4.1; AP002414.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.0838 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD62-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD62-2:1
4.0 lnc-ANKRD62-2:1
4.1 lnc-ANKRD62-2:1
5.0 lnc-ANKRD62-2:1
5.1 lnc-RIOK3-159:1
5.2 lnc-ANKRD62-2:1