Transcript: lnc-ANLN-2:1

Basic information

LNCipedia transcript ID: lnc-ANLN-2:1 
LNCipedia gene ID: lnc-ANLN-2
Ensembl Gene ID: ENSG00000229424
Ensembl Transcript ID: ENST00000419326
Location (hg38): chr7:36750687-36763081
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012995; ENST00000419326; ENST00000419326.1; AC007349.4-001; OTTHUMT00000337767.1; NONHSAT120136
Alternative gene names: XLOC_006048; linc-GPR141-4; ENSG00000229424; AC007349.4; ENSG00000229424.1; OTTHUMG00000154946.1; AC007349.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.1687 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANLN-2:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANLN-2:1
3.1 lnc-ANLN-2:1
4.0 lnc-ANLN-2:1
4.1 lnc-ANLN-2:1
5.0 lnc-ANLN-2:1
5.1 lnc-CCDC129-56:1
5.2 lnc-ANLN-2:1