Transcript: lnc-ANXA2R-1:24

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:24 
LNCipedia gene ID: lnc-ANXA2R-1
Ensembl Gene ID: ENSG00000271788
Ensembl Transcript ID: ENST00000607715
Location (hg38): chr5:43006733-43007543
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 811 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607715.1
Alternative gene names: ENSG00000271788.1; CTD-2201E18.5; AC008875.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.8319 non-coding 
CPAT coding probability 8.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:24 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf39-5:1
4.0 lnc-C5orf39-5:1
4.1 lnc-C5orf39-1:24
5.0 lnc-C5orf39-1:24
5.1 lnc-SELENOP-8:24
5.2 lnc-ANXA2R-1:24