Transcript: lnc-AOX1-1:5

Basic information

LNCipedia transcript ID: lnc-AOX1-1:5 
LNCipedia gene ID: lnc-AOX1-1
Ensembl Gene ID: ENSG00000284084
Ensembl Transcript ID: ENST00000502600
Location (hg38): chr2:200695917-200748040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT076315; ENST00000502600.5
Alternative gene names: ENSG00000284084.1; AC007163.2; AOX3P-AOX2P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 453.4315 coding 
CPAT coding probability 35.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AOX1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AOX1-1:5
4.0 lnc-AOX1-1:5
4.1 lnc-AOX1-1:5
5.0 lnc-AOX1-1:5
5.1 lnc-NDUFB3-10:4
5.2 lnc-AOX1-1:5