Transcript: lnc-AP1S2-4:1

Basic information

LNCipedia transcript ID: lnc-AP1S2-4:1 
LNCipedia gene ID: lnc-AP1S2-4
Location (hg38): chrX:16064080-16069719
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 775 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3891_chrX:16082202-16087842_76bGuttman_hLF
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8847 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP1S2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1S2-4:1
4.0 lnc-AP1S2-4:1
4.1 lnc-AP1S2-4:1
5.0 lnc-AP1S2-4:1
5.1 lnc-PCSK1N-180:1
5.2 lnc-AP1S2-4:1