Transcript: lnc-AP3B2-1:1

Basic information

LNCipedia transcript ID: lnc-AP3B2-1:1 
LNCipedia gene ID: lnc-AP3B2-1
Location (hg38): chr15:82710473-82714026
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2569 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00023250; ENST00000440479; ENST00000440479.1; AC105339.1-002; OTTHUMT00000337773.1; NONHSAT047853
Alternative gene names: XLOC_011552; linc-AP3B2; ENSG00000228141; AC105339.1; ENSG00000228141.2; OTTHUMG00000154948.2; ENSG00000228141.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 55.0692 non-coding 
CPAT coding probability 28.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AP3B2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP3B2-1:1
3.1 lnc-AP3B2-1:1
4.0 lnc-AP3B2-1:1
4.1 lnc-AP3B2-1:1
5.0 lnc-AP3B2-1:1
5.1 lnc-FSD2-5:1
5.2 lnc-AP3B2-1:1