Transcript: lnc-AP3M1-2:1

Basic information

LNCipedia transcript ID: lnc-AP3M1-2:1 
LNCipedia gene ID: lnc-AP3M1-2
Location (hg38): chr10:74096166-74102427
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 360 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000452836.1; RP11-178G16.2-001; OTTHUMT00000048756.1
Alternative gene names: ENSG00000228726.1; RP11-178G16.2; OTTHUMG00000018499.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.4037 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3M1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3M1-2:1
4.0 lnc-AP3M1-2:1
4.1 lnc-AP3M1-2:1
5.0 lnc-AP3M1-2:1
5.1 lnc-VSIR-39:2
5.2 lnc-AP3M1-2:1