Transcript: lnc-AP3M1-3:2

Basic information

LNCipedia transcript ID: lnc-AP3M1-3:2 
LNCipedia gene ID: lnc-AP3M1-3
Ensembl Gene ID: ENSG00000232342
Ensembl Transcript ID: ENST00000609392
Location (hg38): chr10:74527766-74530553
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 274 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609392.1
Alternative gene names: ENSG00000232342.3; RP11-46O21.2; ENSG00000232342.7; AC022540.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.4299 non-coding 
CPAT coding probability 4.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3M1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3M1-3:2
4.0 lnc-AP3M1-3:2
4.1 lnc-AP3M1-3:2
5.0 lnc-AP3M1-3:2
5.1 lnc-VSIR-46:1
5.2 lnc-AP3M1-3:2