Transcript: lnc-AP3M1-3:3

Basic information

LNCipedia transcript ID: lnc-AP3M1-3:3 
LNCipedia gene ID: lnc-AP3M1-3
Location (hg38): chr10:74506132-74529355
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 914 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000448214.3
Alternative gene names: ENSG00000232342.3; RP11-46O21.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.5025 non-coding 
CPAT coding probability 19.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3M1-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3M1-3:3
4.0 lnc-AP3M1-3:3
4.1 lnc-AP3M1-3:3
5.0 lnc-AP3M1-3:3
5.1 lnc-VSIR-46:2
5.2 lnc-AP3M1-3:3