Transcript: lnc-AP3M1-3:5

Basic information

LNCipedia transcript ID: lnc-AP3M1-3:5 
LNCipedia gene ID: lnc-AP3M1-3
Ensembl Gene ID: ENSG00000232342
Ensembl Transcript ID: ENST00000595410
Location (hg38): chr10:74509353-74529318
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT014060; ENST00000595410.1; ENST00000595410.5
Alternative gene names: ENSG00000232342.3; RP11-46O21.2; ENSG00000232342.7; AC022540.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.7349 non-coding 
CPAT coding probability 2.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3M1-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3M1-3:5
4.0 lnc-AP3M1-3:5
4.1 lnc-AP3M1-3:5
5.0 lnc-AP3M1-3:5
5.1 lnc-VSIR-46:6
5.2 lnc-AP3M1-3:5