Transcript: lnc-AP3M1-3:6

Basic information

LNCipedia transcript ID: lnc-AP3M1-3:6 
LNCipedia gene ID: lnc-AP3M1-3
RefSeq ID: NR_120673
Location (hg38): chr10:74506498-74529324
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 517 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120673; NR_120673.1
Alternative gene names: LOC102723439


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.7523 non-coding 
CPAT coding probability 4.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3M1-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3M1-3:6
4.0 lnc-AP3M1-3:6
4.1 lnc-AP3M1-3:6
5.0 lnc-AP3M1-3:6
5.1 lnc-VSIR-46:5
5.2 lnc-AP3M1-3:6