Transcript: lnc-AP3M2-3:1

Basic information

LNCipedia transcript ID: lnc-AP3M2-3:1 
LNCipedia gene ID: lnc-AP3M2-3
Location (hg38): chr8:42052267-42054213
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1947 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098667.1|ENCT00000424416.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.4391 non-coding 
CPAT coding probability 12.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3M2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AP3M2-3:1
5.0 lnc-AP3M2-3:1
5.1 lnc-KCNU1-83:1
5.2 lnc-AP3M2-3:1