Transcript: lnc-APAF1-2:1

Basic information

LNCipedia transcript ID: lnc-APAF1-2:1 
LNCipedia gene ID: lnc-APAF1-2
Location (hg38): chr12:99093359-99105009
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1036 bp
Exons: 5
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000510869
Alternative gene names: ENSG00000249900


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.3742 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APAF1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APAF1-2:1
3.1 lnc-APAF1-2:1
4.0 lnc-APAF1-2:1
4.1 lnc-APAF1-2:1
5.0 lnc-APAF1-2:1
5.1 lnc-TMPO-13:1
5.2 lnc-APAF1-2:1