Transcript: lnc-APCDD1-1:1

Basic information

LNCipedia transcript ID: lnc-APCDD1-1:1 
LNCipedia gene ID: lnc-APCDD1-1
Ensembl Gene ID: ENSG00000266102
Ensembl Transcript ID: ENST00000580258
Location (hg38): chr18:10375103-10378114
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580258.1; RP11-243E13.2-001; OTTHUMT00000442260.1; NONHSAT057261
Alternative gene names: ENSG00000266102.1; RP11-243E13.2; OTTHUMG00000178511.1; AP006219.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -405.0915 non-coding 
CPAT coding probability 12.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APCDD1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APCDD1-1:1
4.0 lnc-APCDD1-1:1
4.1 lnc-APCDD1-1:1
5.0 lnc-APCDD1-1:1
5.1 lnc-RIOK3-196:1
5.2 lnc-APCDD1-1:1