Transcript: lnc-APH1A-2:2

Basic information

LNCipedia transcript ID: lnc-APH1A-2:2 
LNCipedia gene ID: lnc-APH1A-2
Ensembl Gene ID: ENSG00000276110
Ensembl Transcript ID: ENST00000611044
Location (hg38): chr1:150255095-150257286
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 714 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611044.1
Alternative gene names: ENSG00000276110.1; RP4-790G17.7; AC242988.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.073 non-coding 
CPAT coding probability 2.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APH1A-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-APH1A-2:2
4.1 lnc-APH1A-2:2
5.0 lnc-APH1A-2:2
5.1 lnc-APH1A-2:2
5.2 lnc-APH1A-2:2