Transcript: lnc-APMAP-3:1

Basic information

LNCipedia transcript ID: lnc-APMAP-3:1 
LNCipedia gene ID: lnc-APMAP-3
Ensembl Gene ID: ENSG00000228539
Ensembl Transcript ID: ENST00000458461
Location (hg38): chr20:24491472-24502345
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 823 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458461; ENST00000458461.1; RP11-526K17.2-001; OTTHUMT00000078373.1; NONHSAT079111
Alternative gene names: ENSG00000228539; RP11-526K17.2; ENSG00000228539.1; OTTHUMG00000032101.1; AL157413.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.8744 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APMAP-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf3-3:1
3.1 lnc-C20orf3-3:1
4.0 lnc-C20orf3-3:1
4.1 lnc-C20orf3-3:1
5.0 lnc-C20orf3-3:1
5.1 lnc-CST4-31:1
5.2 lnc-APMAP-3:1