Transcript: lnc-APOA4-1:1

Basic information

LNCipedia transcript ID: lnc-APOA4-1:1 
LNCipedia gene ID: lnc-APOA4-1
Ensembl Gene ID: ENSG00000236267
Ensembl Transcript ID: ENST00000457746
Location (hg38): chr11:116813204-116814003
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 333 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019176; ENST00000457746.1; AP006216.5-001; OTTHUMT00000106282.2
Alternative gene names: XLOC_009567; linc-APOA5; ENSG00000236267.1; AP006216.5; OTTHUMG00000046113.2; AP006216.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.7144 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOA4-1:1 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOA4-1:1
3.1 lnc-APOA4-1:1
4.0 lnc-APOA4-1:1
4.1 lnc-APOA4-1:1
5.0 lnc-APOA4-1:1
5.1 lnc-SCN4B-41:2
5.2 lnc-APOA4-1:1