Transcript: lnc-APOB-14:1

Basic information

LNCipedia transcript ID: lnc-APOB-14:1 
LNCipedia gene ID: lnc-APOB-14
Location (hg38): chr2:21540939-21564128
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2098 bp
Exons: 3
Sources: NONCODE v4; Nielsen et al.,2014
Alternative transcript names: NONHSAT069497; ucscGeneNc_uc002ree_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.8548 non-coding 
CPAT coding probability 5.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOB-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APOB-14:1
4.0 lnc-APOB-14:1
4.1 lnc-APOB-14:1
5.0 lnc-APOB-14:1
5.1 lnc-DNAJC27-60:1
5.2 lnc-APOB-14:1