Transcript: lnc-APOB-1:1

Basic information

LNCipedia transcript ID: lnc-APOB-1:1 
LNCipedia gene ID: lnc-APOB-1
Location (hg38): chr2:20999337-21000917
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1581 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000567376.1; RP11-116D2.1-001; OTTHUMT00000431026.1
Alternative gene names: ENSG00000261012.1; RP11-116D2.1; OTTHUMG00000175749.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.6718 non-coding 
CPAT coding probability 5.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOB-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APOB-1:1
4.0 lnc-APOB-1:1
4.1 lnc-APOB-1:1
5.0 lnc-APOB-1:1
5.1 lnc-RAD51AP2-57:1
5.2 lnc-APOB-1:1