Transcript: lnc-APOB-5:2

Basic information

LNCipedia transcript ID: lnc-APOB-5:2 
LNCipedia gene ID: lnc-APOB-5
Ensembl Gene ID: ENSG00000228538
Ensembl Transcript ID: ENST00000416032
Location (hg38): chr2:21638431-21649502
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 374 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416032; ENST00000416032.1; AC009411.1-002; OTTHUMT00000324019.1; ENST00000416032.5
Alternative gene names: ENSG00000228538; AC009411.1; ENSG00000228538.1; OTTHUMG00000151809.1; ENSG00000228538.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -426.4577 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOB-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOB-4:2
3.1 lnc-APOB-5:2
4.0 lnc-APOB-5:2
4.1 lnc-APOB-5:2
5.0 lnc-APOB-5:2
5.1 lnc-DNAJC27-59:3
5.2 lnc-APOB-5:2