Transcript: lnc-APOC3-4:1

Basic information

LNCipedia transcript ID: lnc-APOC3-4:1 
LNCipedia gene ID: lnc-APOC3-4
Ensembl Gene ID: ENSG00000237937
Ensembl Transcript ID: ENST00000444123
RefSeq ID: NR_135069
Location (hg38): chr11:116639422-116658252
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000444123; ENST00000444123.1; AP000770.1-001; OTTHUMT00000104867.1; NONHSAT024350; ENST00000444123.5; NR_135069.1
Alternative gene names: ENSG00000237937; AP000770.1; ENSG00000237937.1; OTTHUMG00000045138.1; ENSG00000237937.5; LOC101929011


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.7887 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOC3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOC3-3:1
3.1 lnc-APOC3-4:1
4.0 lnc-APOC3-4:1
4.1 lnc-APOC3-4:1
5.0 lnc-APOC3-4:1
5.1 lnc-HMBS-63:1
5.2 lnc-APOC3-4:1