Transcript: lnc-APOC3-6:11

Basic information

LNCipedia transcript ID: lnc-APOC3-6:11 
LNCipedia gene ID: lnc-APOC3-6
Location (hg38): chr11:115659249-115916497
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 884 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000256717.1|MICT00000067799.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -184.5134 non-coding 
CPAT coding probability 31.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOC3-6:11 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-APOC3-6:11
5.0 lnc-APOC3-6:11
5.1 lnc-HMBS-67:3
5.2 lnc-APOC3-6:11